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My fat morphs explode if I try to combine mesh parts for the fat morph. What I end up doing is duplicating my normal morph and then making it fatter. That seems to work without any explosions. (See HystericalParoxysm's advice in
post #4 of the link below.)
If you follow the meshing instructions in the basic tutorials, you should end up with a mesh with a working fat morph. There's no reason why a fat morph wouldn't show up (unless there's a problem with the group name and comments in MilkShape).
Making other morphs... I'm not sure, as I've never made anything but fat morphs. I think it has to do with the group name and the comments in MilkShape. CatOfEvilGenius gives some tips in
this thread.